Hi Rob,
Reducing the backlash is definitely recommended if you can . A mount such as the EQ6-R should not need to be limited to unidirectional guiding and you will be able to get much better out of your mount with some tweaking. The process is not too difficult but it can take a few iterations especially if it's your first time - but the good news is these mounts are very difficult to actually 'break' or do irreversible damage when you pull them apart.
There are two adjustments you can make that affect the backlash - timing belt adjustment and worm gear mesh adjustment.
The timing belt adjustment is less involved so the first thing to do would be to unscrew the dec belt cover on the side of the mount and see what state the belt is in. Set the mount to a slew speed of maybe 3 or 4 and run the axis back a forward a few times (you might need a slower or faster speed but the aim is to be able to see how the belt engages the pullies). Watch what the belt does as it goes through a reversal of direction. Does the belt look loose or take a while to truly start engaging the mount in the opposite direction. Or does it inflect more than a few mm with moderate finger tip pressure applied? If either of these look to be true then it could be manifesting as backlash from a loose belt engagement. You can tighten the belt mesh engagement by slightly loosening the motor mounting screws enough to allow tightening of set screw that 'pushes' the motor further away from the mount housing in effect stretching the belt. Just be careful not to go too tight. You should be able to induce a few mm of inflection with moderate finger pressure or else you risk shortening the life of the belt. It doesn't need to be guitar string tight.
The next thing to try would be rocking the saddle back and forward and seeing if you can hear or feel a telltale 'tick tick tick' of loose gear teeth engaging in each direction. If your mount ticks that box then you likely need to adjust the worm gear mesh which is much better explained in this excellent video by Glen aka Astrobloke
https://www.youtube.com/watch?v=qujs7Kt_6_c&t=2656s&ab_channel=Astrobloke than I could in a forum post. The ending 6-7 minutes covers what you'd want to know but the whole video is a great watch if you want to learn how your mount works. This adjustment can be a bit tricky and time consuming first time around so if you go for it, I'd try and set aside a good few hours of time and wait for a period of cloudy skies so you can take your time if needed.
Best of luck,
Matt