I have used FFmpeg for file conversion instead of PIPP, maybe it helps circumvent the 2GB file size limit?
Since my uncompressed Autostakkert-ready AVI’s usually end up becoming like 10 GB from Nikon’s MOV… I suspect there is something about PIPP that limits your process, not AVI itself. I might be wrong though.
Here’s my recently updated workflow, since moving to fedora (but Windows also has FFmpeg available to install and use, however; just downloading ffmpeg.exe somewhere reliable and placing it in the Autostakkert directory already works wonders (autostakkert guide page). Otherwise, if you don’t want Autostakkert to have to start processing upon opening each file; .sh is probably .bat, and no need to make it executable, .bat is already executable last I remember):
I made an extToUncompressedAVI.sh script in a text editor that contains the following:
#!/bin/bash
old_extension=$1
for i in *."$old_extension";
do ffmpeg -i "$i" -vcodec rawvideo "${i%.*}.AVI";
done
and have made executable by running
chmod a+x extToUncompressedAVI.sh
in a terminal in the same folder as the script.
I move it to the folder with the .MOVs. Then, I open a terminal and run
sh extToUncompressedAVI.sh MOV
and my PC will chug steadily through the all files there. Just change MOV to whatever extension your camera uses and it should still work, FFmpeg is rather powerful.